ibipimo@1.0.0

get(path, options)

getViralLoadResults(data, options)

post(path, body, options)

postViralLoadRequest(data, options)

processViralLoadResults(processor)

processViralLoadSubmission(processor)

request(method, path, options)

This adaptor exports the following from common:

as

combine

cursor

dataPath

dataValue

dateFns

each

field

fields

fn

fnIf

group

lastReferenceValue

map

merge

scrubEmojis

sourceValue

util

Functions

get

get(path, options) ⇒ Operation

Make a GET request

Param	Type	Description
path	string	Path to resource
options	RequestOptions	Optional request options (query params, headers, etc.)

Example

get("/api/v1/samples/status");

Example

get("/api/v1/sites", { query: { active: true } });

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getViralLoadResults

getViralLoadResults(data, options) ⇒ Operation

Get viral load test results from IBIPIMO

Param	Type	Description
data	object	Object containing siteid and sample_uids array
options	RequestOptions	Optional request options

This operation writes the following keys to state:

State Key	Description
data	the parsed response body
response	the response from the HTTP server, including headers, statusCode, body, etc
references	an array of all previous data objects used in the Job

Example

getViralLoadResults({
  siteid: "77889900",
  sample_uids: ["2026010401", "IBI-2024-000001"]
});

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post

post(path, body, options) ⇒ Operation

Make a POST request

Param	Type	Description
path	string	Path to resource
body	object	Body data
options	RequestOptions	Optional request options

Example

post("/api/v1/ask-for-vl-results", { siteid: "77889900", sample_uids: ["2026010401"]});

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postViralLoadRequest

postViralLoadRequest(data, options) ⇒ Operation

Post viral load test requests to IBIPIMO

Param	Type	Description
data	object	Object containing siteid and samples array
options	RequestOptions	Optional request options

This operation writes the following keys to state:

State Key	Description
data	the parsed response body
response	the response from the HTTP server, including headers, statusCode, body, etc
references	an array of all previous data objects used in the Job

Example

postViralLoadRequest({
  siteid: "77889900",
  samples: [{
    sidainfo_uid: "147460",
    p_code: "000003",
    p_name: "Magara",
    p_prename: "Mahire",
    p_sex: "M",
    p_dob: "1950-01-15",
    // ... other required fields
  }]
});

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processViralLoadResults

processViralLoadResults(processor) ⇒ Operation

The processResults function returns an object with:

• totalRequested: Number of samples requested
• totalFound: Number of results available
• totalPending: Number of samples without published results
• availableResults: Array of sample results ready for processing
• pendingSamples: Array of sample UIDs still being processed
• sampleStatuses: Object with detailed status info per sample
• notFoundSamples: Array of sample UIDs not found in system

Param	Type	Description
processor	function	Function that receives (state, processResults) where processResults transforms IBIPIMO response into structured format

This operation writes the following keys to state:

State Key	Description
data	the parsed response body
response	the response from the HTTP server, including headers, statusCode, body, etc
references	an array of all previous data objects used in the Job

Example

// After getting results from IBIPIMO
getViralLoadResults({
  siteid: "77889900",
  sample_uids: ["634R", "634W"]
});

// Process the response
processViralLoadResults((state, processResults) => {
  const processed = processResults(state.data);

  console.log(`Found ${processed.totalFound}/${processed.totalRequested} results`);
  console.log(`${processed.totalPending} samples still pending`);

  // Use processed data for SIDAInfo integration
  return {
    ...state,
    readyForSidaInfo: processed.availableResults,
    pendingSamples: processed.pendingSamples
  };
});

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processViralLoadSubmission

processViralLoadSubmission(processor) ⇒ Operation

The processSubmission function returns: savedSamples, savedCount, errors, errorCount, hasErrors, sampleIds

Param	Type	Description
processor	function	Function that receives (state, processSubmission) where processSubmission transforms IBIPIMO submission response

This operation writes the following keys to state:

State Key	Description
data	the parsed response body
response	the response from the HTTP server, including headers, statusCode, body, etc
references	an array of all previous data objects used in the Job

Example

postViralLoadRequest({
  siteid: "77889900",
  samples: [{ sidainfo_uid: "147460", p_name: "Test" }]
});

processViralLoadSubmission((state, processSubmission) => {
  const result = processSubmission(state.data);
  if (result.hasErrors) {
    return { ...state, submissionFailed: true, errors: result.errors };
  }
  return { ...state, newSampleIds: result.sampleIds };
});

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request

request(method, path, options) ⇒ Operation

Make a general HTTP request

Param	Type	Description
method	string	HTTP method to use
path	string	Path to resource (include /api/v1/ if needed)
options	RequestOptions	Optional request options

This operation writes the following keys to state:

State Key	Description
data	the parsed response body
response	the response from the HTTP server, including headers, statusCode, body, etc
references	an array of all previous data objects used in the Job

Example

request("POST", "/api/v1/ask-for-vl-results", { siteid: "77889900", sample_uids: ["2026010401"]});

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Interfaces

HttpState

State object

Properties

Name	Description
data	the parsed response body
response	the response from the HTTP server, including headers, statusCode, body, etc
references	an array of all previous data objects used in the Job

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RequestOptions

Options provided to the HTTP request

Properties

Name	Type	Description
body	object | string	body data to append to the request. JSON will be converted to a string (but a content-type header will not be attached to the request).
errors	object	Map of errorCodes -> error messages, ie, { 404: 'Resource not found;' }. Pass false to suppress errors for this code.
form	object	Pass a JSON object to be serialised into a multipart HTML form (as FormData) in the body.
query	object	An object of query parameters to be encoded into the URL.
headers	object	An object of headers to append to the request.
parseAs	string	Parse the response body as json, text or stream. By default will use the response headers.
timeout	number	Request timeout in ms. Default: 300 seconds.
tls	object	TLS/SSL authentication options. See https://nodejs.org/api/tls.html#tlscreatesecurecontextoptions

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